3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03945

Details:

PFam ID : PF03945

PFam Domain Description : delta endotoxin, N-terminal domain

Number of Sequence in 50% Dataset : 120

Number of Sequence in Full Dataset : 240

Average sequence length: 208.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03945	M3R_DICDI_84_295	65.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03945	D3AWG4_POLPA_58_288	100

Sequence based PCA Plot of the family - PF03945 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=28
Motif2 Start=88 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay