3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03944

Details:

PFam ID : PF03944

PFam Domain Description : delta endotoxin

Number of Sequence in 50% Dataset : 84

Number of Sequence in Full Dataset : 162

Average sequence length: 133.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03944	C2Y481_BACCE_538_675	97.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03944	C18CA_PAEPP_555_690	100

Sequence based PCA Plot of the family - PF03944 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=8
Motif2 Start=1 Length=17
Motif3 Start=156 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay