3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03942

Details:

PFam ID : PF03942

PFam Domain Description : DTW domain

Number of Sequence in 50% Dataset : 153

Number of Sequence in Full Dataset : 516

Average sequence length: 186.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03942	A2F557_TRIVA_96_160	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03942	B4K3P9_DROGR_22_175	100

Sequence based PCA Plot of the family - PF03942 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=282 Length=8
Motif2 Start=215 Length=8
Motif3 Start=238 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay