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3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03940
Details:

PFam ID : PF03940

PFam Domain Description : Male specific sperm protein

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 6

Average sequence length: 36.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF03940Q8IE82_PLAF7_1_101No suitable BRS could be identified
HMMER Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF03940Q6QAU0_DROMA_1_32100
Sequence based PCA Plot of the family - PF03940 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:
Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay