3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03938

Details:

PFam ID : PF03938

PFam Domain Description : Outer membrane protein (OmpH-like)

Number of Sequence in 50% Dataset : 393

Number of Sequence in Full Dataset : 988

Average sequence length: 153.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03938	C0R163_BRAHW_57_130	51.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03938	C5S2Z1_9PAST_9_227	99.5

Sequence based PCA Plot of the family - PF03938 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=185 Length=11
Motif3 Start=16 Length=8
Motif4 Start=209 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay