3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03937

Details:

PFam ID : PF03937

PFam Domain Description : Flavinator of succinate dehydrogenase

Number of Sequence in 50% Dataset : 16

Number of Sequence in Full Dataset : 471

Average sequence length: 50.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03937	D0NGZ9_PHYIT_181_236	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03937	B6AFX2_CRYMR_46_96	100

Sequence based PCA Plot of the family - PF03937 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=17
Motif2 Start=32 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay