3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03936

Details:

PFam ID : PF03936

PFam Domain Description : Terpene synthase family, metal binding domain

Number of Sequence in 50% Dataset : 280

Number of Sequence in Full Dataset : 1054

Average sequence length: 227.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03936	D0NGZ9_PHYIT_181_236	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03936	B9RXW6_RICCO_86_180	99.1

Sequence based PCA Plot of the family - PF03936 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=23 Length=8
Motif2 Start=1 Length=8
Motif3 Start=14 Length=8
Motif4 Start=36 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay