3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03935

Details:

PFam ID : PF03935

PFam Domain Description : Beta-glucan synthesis-associated protein (SKN1)

Number of Sequence in 50% Dataset : 73

Number of Sequence in Full Dataset : 261

Average sequence length: 335.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03935	D0NGZ9_PHYIT_181_236	55.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03935	E3L4I1_PUCGT_119_247	98.8

Sequence based PCA Plot of the family - PF03935 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=63 Length=11
Motif3 Start=23 Length=8
Motif4 Start=46 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay