3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03934

Details:

PFam ID : PF03934

PFam Domain Description : Type II secretion system (T2SS), protein K

Number of Sequence in 50% Dataset : 230

Number of Sequence in Full Dataset : 409

Average sequence length: 246.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03934	B8CZA2_HALOH_32_204	93.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03934	B8CZA2_HALOH_32_204	99.5

Sequence based PCA Plot of the family - PF03934 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=103 Length=8
Motif4 Start=170 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay