3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03932

Details:

PFam ID : PF03932

PFam Domain Description : CutC family

Number of Sequence in 50% Dataset : 88

Number of Sequence in Full Dataset : 527

Average sequence length: 194.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03932	Q9U2N1_CAEEL_1_25	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03932	D2V258_NAEGR_2_253	100

Sequence based PCA Plot of the family - PF03932 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=33 Length=8
Motif2 Start=221 Length=8
Motif3 Start=20 Length=8
Motif4 Start=149 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay