3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03930

Details:

PFam ID : PF03930

PFam Domain Description : flt3 ligand

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 9

Average sequence length: 75

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03930	B4S5X2_PROA2_119_151	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03930	FLP_ZYGBA_44_129	100

Sequence based PCA Plot of the family - PF03930 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay