3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03928

Details:

PFam ID : PF03928

PFam Domain Description : Domain of unknown function (DUF336)

Number of Sequence in 50% Dataset : 146

Number of Sequence in Full Dataset : 856

Average sequence length: 127.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03928	A2P6G2_VIBCH_1_70	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03928	E0KKM2_STRVO_1_83	100

Sequence based PCA Plot of the family - PF03928 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=161 Length=8
Motif3 Start=28 Length=8
Motif4 Start=148 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay