3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03924

Details:

PFam ID : PF03924

PFam Domain Description : CHASE domain

Number of Sequence in 50% Dataset : 314

Number of Sequence in Full Dataset : 614

Average sequence length: 179.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03924	A0Y8Q5_9GAMM_27_187	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03924	D8U6K8_VOLCA_164_380	100

Sequence based PCA Plot of the family - PF03924 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=11
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=75 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay