3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03922

Details:

PFam ID : PF03922

PFam Domain Description : OmpW family

Number of Sequence in 50% Dataset : 73

Number of Sequence in Full Dataset : 439

Average sequence length: 191.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03922	A4JYI9_DANRE_22_110	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03922	E1VMY8_9GAMM_40_288	100

Sequence based PCA Plot of the family - PF03922 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=50 Length=8
Motif2 Start=3 Length=8
Motif3 Start=188 Length=11
Motif4 Start=112 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay