3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03921

Details:

PFam ID : PF03921

PFam Domain Description : Intercellular adhesion molecule (ICAM), N-terminal domain

Number of Sequence in 50% Dataset : 11

Number of Sequence in Full Dataset : 48

Average sequence length: 86.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03921	A4JYI9_DANRE_22_110	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03921	ICAM4_PANTR_44_134	100

Sequence based PCA Plot of the family - PF03921 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=22 Length=27

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay