3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03919

Details:

PFam ID : PF03919

PFam Domain Description : mRNA capping enzyme, C-terminal domain

Number of Sequence in 50% Dataset : 47

Number of Sequence in Full Dataset : 179

Average sequence length: 107.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03919	A8IZC9_CHLRE_327_384	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03919	MCE1_KLULA_249_396	100

Sequence based PCA Plot of the family - PF03919 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=50 Length=8
Motif2 Start=6 Length=18
Motif3 Start=28 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay