3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03918

Details:

PFam ID : PF03918

PFam Domain Description : Cytochrome C biogenesis protein

Number of Sequence in 50% Dataset : 65

Number of Sequence in Full Dataset : 540

Average sequence length: 144.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03918	B6KER0_TOXGO_244_337	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03918	Q9RXG9_DEIRA_12_193	100

Sequence based PCA Plot of the family - PF03918 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=60 Length=8
Motif3 Start=37 Length=8
Motif4 Start=90 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay