3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03917

Details:

PFam ID : PF03917

PFam Domain Description : Eukaryotic glutathione synthase, ATP binding domain

Number of Sequence in 50% Dataset : 85

Number of Sequence in Full Dataset : 259

Average sequence length: 378.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03917	B6KER0_TOXGO_244_337	73.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03917	E9APT6_LEIME_41_606	100

Sequence based PCA Plot of the family - PF03917 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=104 Length=8
Motif2 Start=55 Length=8
Motif3 Start=80 Length=8
Motif4 Start=5 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay