3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03915

Details:

PFam ID : PF03915

PFam Domain Description : Actin interacting protein 3

Number of Sequence in 50% Dataset : 35

Number of Sequence in Full Dataset : 105

Average sequence length: 299.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03915	C3XXQ9_BRAFL_404_630	61.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03915	A7RUX7_NEMVE_191_292	100

Sequence based PCA Plot of the family - PF03915 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=18
Motif2 Start=59 Length=8
Motif3 Start=46 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay