3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03914

Details:

PFam ID : PF03914

PFam Domain Description : CBF/Mak21 family

Number of Sequence in 50% Dataset : 115

Number of Sequence in Full Dataset : 427

Average sequence length: 176.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03914	MPAA5_AMBEL_1_44	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03914	E1ZHJ5_9CHLO_577_677	100

Sequence based PCA Plot of the family - PF03914 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=90 Length=11
Motif2 Start=229 Length=8
Motif3 Start=108 Length=8
Motif4 Start=254 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay