3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03910

Details:

PFam ID : PF03910

PFam Domain Description : Adenovirus minor core protein PV

Number of Sequence in 50% Dataset : 9

Number of Sequence in Full Dataset : 25

Average sequence length: 310.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03910	F2C492_HAEAE_12_153	62.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03910	O71098_ADEB3_2_408	100

Sequence based PCA Plot of the family - PF03910 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=200 Length=8
Motif4 Start=61 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay