3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03909

Details:

PFam ID : PF03909

PFam Domain Description : BSD domain

Number of Sequence in 50% Dataset : 65

Number of Sequence in Full Dataset : 436

Average sequence length: 59.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03909	A0A9M0_ASPOZ_227_295	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03909	E5RZL8_TRISP_138_187	97.7

Sequence based PCA Plot of the family - PF03909 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=21
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay