3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03901

Details:

PFam ID : PF03901

PFam Domain Description : Alg9-like mannosyltransferase family

Number of Sequence in 50% Dataset : 283

Number of Sequence in Full Dataset : 634

Average sequence length: 349.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03901	C3ZIY0_BRAFL_1_57	96.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03901	E3LFP0_CAERE_38_321	100

Sequence based PCA Plot of the family - PF03901 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=21 Length=20
Motif2 Start=1 Length=8
Motif3 Start=127 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay