3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03896

Details:

PFam ID : PF03896

PFam Domain Description : Translocon-associated protein (TRAP), alpha subunit

Number of Sequence in 50% Dataset : 53

Number of Sequence in Full Dataset : 149

Average sequence length: 212.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03896	B5M728_AMBAM_1_162	57.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03896	B0XHD0_CULQU_156_211	99.3

Sequence based PCA Plot of the family - PF03896 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay