3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03894

Details:

PFam ID : PF03894

PFam Domain Description : D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase

Number of Sequence in 50% Dataset : 15

Number of Sequence in Full Dataset : 363

Average sequence length: 169.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03894	B8BEN9_ORYSI_767_819	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03894	Q1EN16_9CELL_554_603	100

Sequence based PCA Plot of the family - PF03894 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=90 Length=8
Motif3 Start=147 Length=8
Motif4 Start=19 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay