3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03892

Details:

PFam ID : PF03892

PFam Domain Description : Nitrate reductase cytochrome c-type subunit (NapB)

Number of Sequence in 50% Dataset : 21

Number of Sequence in Full Dataset : 211

Average sequence length: 128.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03892	D5EKZ0_CORAD_76_179	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03892	D0U4E1_9GAMM_36_179	100

Sequence based PCA Plot of the family - PF03892 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=62 Length=8
Motif3 Start=81 Length=8
Motif4 Start=120 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay