3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03891

Details:

PFam ID : PF03891

PFam Domain Description : Domain of unknown function (DUF333)

Number of Sequence in 50% Dataset : 12

Number of Sequence in Full Dataset : 192

Average sequence length: 48.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03891	D8D3K3_COMTE_17_62	81.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03891	C8PEP1_9PROT_20_68	96.8

Sequence based PCA Plot of the family - PF03891 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=33 Length=8
Motif2 Start=4 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay