3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03889

Details:

PFam ID : PF03889

PFam Domain Description : Domain of unknown function

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 98

Average sequence length: 38.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03889	E1VI74_9GAMM_76_393	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03889	D9SQ36_CLOC7_28_48	95.8

Sequence based PCA Plot of the family - PF03889 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=22 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay