3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03888

Details:

PFam ID : PF03888

PFam Domain Description : MucB/RseB family

Number of Sequence in 50% Dataset : 81

Number of Sequence in Full Dataset : 221

Average sequence length: 273.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03888	E1VI74_9GAMM_76_393	91.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03888	E1VI74_9GAMM_76_393	100

Sequence based PCA Plot of the family - PF03888 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=181 Length=11
Motif2 Start=113 Length=8
Motif3 Start=211 Length=11
Motif4 Start=250 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay