3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03887

Details:

PFam ID : PF03887

PFam Domain Description : YfbU domain

Number of Sequence in 50% Dataset : 27

Number of Sequence in Full Dataset : 75

Average sequence length: 159.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03887	A1SC31_NOCSJ_54_244	96.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03887	A1SC31_NOCSJ_54_244	100

Sequence based PCA Plot of the family - PF03887 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=7 Length=8
Motif2 Start=74 Length=8
Motif3 Start=145 Length=14
Motif4 Start=105 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay