3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03884

Details:

PFam ID : PF03884

PFam Domain Description : Domain of unknown function (DUF329)

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 397

Average sequence length: 58.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03884	B1G7C1_9BURK_1_29	16.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03884	Y192_WIGBR_1_48	98.7

Sequence based PCA Plot of the family - PF03884 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=20 Length=27
Motif2 Start=1 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay