3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03881

Details:

PFam ID : PF03881

PFam Domain Description : Fructosamine kinase

Number of Sequence in 50% Dataset : 146

Number of Sequence in Full Dataset : 569

Average sequence length: 261.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03881	D5GH75_TUBMM_7_53	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03881	C0WRB7_LACBU_10_79	100

Sequence based PCA Plot of the family - PF03881 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=59 Length=8
Motif2 Start=77 Length=8
Motif3 Start=113 Length=8
Motif4 Start=130 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay