3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03880

Details:

PFam ID : PF03880

PFam Domain Description : DbpA RNA binding domain

Number of Sequence in 50% Dataset : 90

Number of Sequence in Full Dataset : 884

Average sequence length: 73.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03880	D5GH75_TUBMM_7_53	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03880	A7HKQ8_FERNB_477_552	100

Sequence based PCA Plot of the family - PF03880 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=42 Length=8
Motif2 Start=33 Length=8
Motif3 Start=2 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay