3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03879

Details:

PFam ID : PF03879

PFam Domain Description : Cgr1 family

Number of Sequence in 50% Dataset : 10

Number of Sequence in Full Dataset : 69

Average sequence length: 102.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03879	D5GH75_TUBMM_7_53	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03879	B8PFC2_POSPM_33_125	98.5

Sequence based PCA Plot of the family - PF03879 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=8 Length=37

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay