3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03878

Details:

PFam ID : PF03878

PFam Domain Description : YIF1

Number of Sequence in 50% Dataset : 59

Number of Sequence in Full Dataset : 167

Average sequence length: 212.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03878	B0EUA9_ENTDI_2_230	77.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03878	E9AUQ3_LEIME_32_316	100

Sequence based PCA Plot of the family - PF03878 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=105 Length=8
Motif2 Start=219 Length=8
Motif3 Start=38 Length=8
Motif4 Start=55 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay