3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03873

Details:

PFam ID : PF03873

PFam Domain Description : Anti sigma-E protein RseA, C-terminal domain

Number of Sequence in 50% Dataset : 11

Number of Sequence in Full Dataset : 102

Average sequence length: 54.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03873	D0KYN0_HALNC_14_109	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03873	A6FDN6_9GAMM_123_180	89

Sequence based PCA Plot of the family - PF03873 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay