3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03872

Details:

PFam ID : PF03872

PFam Domain Description : Anti sigma-E protein RseA, N-terminal domain

Number of Sequence in 50% Dataset : 80

Number of Sequence in Full Dataset : 262

Average sequence length: 95.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03872	D0KYN0_HALNC_14_109	94.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03872	C5CSE9_VARPS_5_153	100

Sequence based PCA Plot of the family - PF03872 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=33 Length=8
Motif2 Start=24 Length=8
Motif3 Start=3 Length=20

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay