3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03869

Details:

PFam ID : PF03869

PFam Domain Description : Arc-like DNA binding domain

Number of Sequence in 50% Dataset : 40

Number of Sequence in Full Dataset : 204

Average sequence length: 45.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03869	A1SMC2_NOCSJ_36_76	7.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03869	A9G1L0_9RHOB_1_53	100

Sequence based PCA Plot of the family - PF03869 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=31 Length=8
Motif2 Start=1 Length=18
Motif3 Start=22 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay