3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03865

Details:

PFam ID : PF03865

PFam Domain Description : Haemolysin secretion/activation protein ShlB/FhaC/HecB

Number of Sequence in 50% Dataset : 134

Number of Sequence in Full Dataset : 436

Average sequence length: 336.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03865	D6KXH6_9NEIS_1_233	78.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03865	A9INW7_BART1_171_583	100

Sequence based PCA Plot of the family - PF03865 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=88 Length=8
Motif2 Start=348 Length=8
Motif3 Start=317 Length=11
Motif4 Start=297 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay