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3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03861
Details:

PFam ID : PF03861

PFam Domain Description : ANTAR domain

Number of Sequence in 50% Dataset : 58

Number of Sequence in Full Dataset : 929

Average sequence length: 55.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF03861E0ULV0_CYAP2_31_49No suitable BRS could be identified
HMMER Based Coverage Results:
Pfam IDBest ProfileCoverage of Best Profile
PF03861B5J427_9RHOB_128_19399.8
Sequence based PCA Plot of the family - PF03861 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=41 Length=8
Motif4 Start=26 Length=8
Download PSSM/HMM Models/Alignment:
Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay