3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03860

Details:

PFam ID : PF03860

PFam Domain Description : Domain of Unknown Function (DUF326)

Number of Sequence in 50% Dataset : 14

Number of Sequence in Full Dataset : 142

Average sequence length: 22.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03860	E0ULV0_CYAP2_31_49	38.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03860	E0ULV0_CYAP2_31_49	70

Sequence based PCA Plot of the family - PF03860 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay