3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03859

Details:

PFam ID : PF03859

PFam Domain Description : CG-1 domain

Number of Sequence in 50% Dataset : 17

Number of Sequence in Full Dataset : 70

Average sequence length: 107.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03859	E9BWQ4_9EUKA_78_202	81.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03859	D0MQ84_PHYIT_14_134	100

Sequence based PCA Plot of the family - PF03859 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=22 Length=8
Motif4 Start=64 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay