3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03858

Details:

PFam ID : PF03858

PFam Domain Description : Crustacean neurohormone H

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 20

Average sequence length: 36.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03858	E5A5D3_LEPMC_1157_1430	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03858	Q6WGR4_NEPNO_25_58	100

Sequence based PCA Plot of the family - PF03858 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay