3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03856

Details:

PFam ID : PF03856

PFam Domain Description : Beta-glucosidase (SUN family)

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 118

Average sequence length: 243.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03856	E5A5D3_LEPMC_1157_1430	83.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03856	E5A5D3_LEPMC_1157_1430	100

Sequence based PCA Plot of the family - PF03856 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=83 Length=8
Motif2 Start=164 Length=11
Motif3 Start=124 Length=14
Motif4 Start=52 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay