3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03853

Details:

PFam ID : PF03853

PFam Domain Description : YjeF-related protein N-terminus

Number of Sequence in 50% Dataset : 331

Number of Sequence in Full Dataset : 1390

Average sequence length: 168.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03853	A6UTR2_META3_106_228	92.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03853	Q72AT1_DESVH_21_255	100

Sequence based PCA Plot of the family - PF03853 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=17 Length=8
Motif2 Start=223 Length=11
Motif3 Start=168 Length=8
Motif4 Start=8 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay