3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03852

Details:

PFam ID : PF03852

PFam Domain Description : DNA mismatch endonuclease Vsr

Number of Sequence in 50% Dataset : 15

Number of Sequence in Full Dataset : 353

Average sequence length: 72.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03852	E1W0D6_ARTAR_60_96	57.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03852	C3R4I6_9BACE_2_48	99.7

Sequence based PCA Plot of the family - PF03852 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=27 Length=8
Motif2 Start=16 Length=8
Motif3 Start=45 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay