3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03851

Details:

PFam ID : PF03851

PFam Domain Description : UV-endonuclease UvdE

Number of Sequence in 50% Dataset : 53

Number of Sequence in Full Dataset : 174

Average sequence length: 255.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03851	Q6LWN1_METMP_26_226	94.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03851	B4BJR8_9BACI_7_120	100

Sequence based PCA Plot of the family - PF03851 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=75 Length=8
Motif2 Start=1 Length=8
Motif3 Start=61 Length=8
Motif4 Start=27 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay