3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03850

Details:

PFam ID : PF03850

PFam Domain Description : Transcription factor Tfb4

Number of Sequence in 50% Dataset : 70

Number of Sequence in Full Dataset : 162

Average sequence length: 234.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03850	Q4N1C3_THEPA_26_327	85.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03850	Q4PG41_USTMA_34_395	100

Sequence based PCA Plot of the family - PF03850 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=109 Length=8
Motif2 Start=54 Length=8
Motif3 Start=33 Length=8
Motif4 Start=240 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay