3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03849

Details:

PFam ID : PF03849

PFam Domain Description : Transcription factor Tfb2

Number of Sequence in 50% Dataset : 71

Number of Sequence in Full Dataset : 168

Average sequence length: 274.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03849	Q4DHY8_TRYCR_138_386	64.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03849	Q259V6_ORYSA_200_316	100

Sequence based PCA Plot of the family - PF03849 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=32 Length=8
Motif2 Start=23 Length=8
Motif3 Start=1 Length=8
Motif4 Start=14 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay