3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF03848

Details:

PFam ID : PF03848

PFam Domain Description : Tellurite resistance protein TehB

Number of Sequence in 50% Dataset : 82

Number of Sequence in Full Dataset : 229

Average sequence length: 158.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03848	B5JQG4_9BACT_79_216	86.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF03848	F0A463_NEIME_88_125	99.5

Sequence based PCA Plot of the family - PF03848 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=2 Length=18
Motif2 Start=127 Length=8
Motif3 Start=50 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay